EvoOntology: A Self-Evolving Ontology Layer for Data Agents
1mo
- Published
- Collected
Authors
Meiduo Chong, Shaolei Zhang, Ju Fan, Xiaoyong Du
Categories
Data agents aim to fulfill natural-language instructions over heterogeneous data, including tables, files, and databases. However, data agents face a challenging agent-data gap: heterogeneous data resides outside the agent, while the agent can access it (e.g., column names and file paths) only through generic tools. Existing approaches either let agents directly explore raw data sources or inject manually constructed semantic layers into prompts. However, neither scales well to large heterogeneous data sources nor adapts to different agent behaviors. In this paper, we introduce EvoOntology, a self-evolving ontology layer for data agents. EvoOntology encapsulates the ontology as an MCP server comprising a schema layer, a content layer, and a tool layer, enabling agents to actively query and interact with the ontology at runtime. To this end, we introduce a builder agent for autonomous ontology construction and a self-evolution loop that continuously refines the ontology through attribution-guided typed edits that are accepted only after a backbone-conditional paired evaluation. Experiments on three well-adopted data-agent benchmarks with four LLM backbones demonstrate that EvoOntology consistently outperforms strong baselines and existing semantic-layer approaches, effectively bridging the agent-data gap and enabling more effective interaction with heterogeneous data. Code: https://github.com/ruc-datalab/EvoOntology
overfeed.news indexes and links. We publish a short excerpt — the full article stays at arXiv AI Papers.
More from arXiv AI Papers
Log in to follow this source
Interpretable Singing Emotion Recognition Using Acoustic and Vocal Technique Features
Singing emotion recognition relies predominantly on deep learning models that achieve strong performance but offer limited insight into the vocal characteristics driving emotion, of- ten overlooking the singing voice as a distinct signal. We propose an interpretable singing emotion recognition framework using a compact set of singing-specific descriptors across prosody, spec- tral features, phonetics, and vocal technique. To decode model decisions and link predictions to measurable acoustic phenomena, we employ SHAP and apply GRAD-CAM to qualitatively assess the learned representations of vocal techniques. Evaluations show that singing-specific features reduce cross-singer variability, while vocal technique descriptors provide interpretable insights into singing expression. Furthermore, out-of-domain evaluation on VocalSet reveals interesting associations between emotional expression and ground-truth technical execution. The analysis highlights vibrato and pharyngeal techniques as salient cues of emotional delivery, with SHAP indicating that vibrato is context-dependent on articulation rate. These findings emphasize the value of domain-specific features for interpretable singing emotion analysis.
Acquisition for Spherical-Linear Bayesian Optimization on the Cube
Recent work demonstrated that executing Bayesian Optimization (BO) using simply a linear surrogate with a clever transformation is enough to approximate the performance of the standard Gaussian-Process (GP) based version on high-dimensional test functions. When the decision region is a sphere, this strategy admits rapid exact acquisition. However, it is the unit cube we encounter most often in the BO literature, and in this setting a standard approach, namely a multi-start quasi-Newton method, is employed for solving the acquisition subproblem. In this article, we will discuss a series of results, both positive and negative, regarding the complexity of global resolution of various acquisition subproblems over the unit cube. On the basis of this discussion, we will propose a new acquisition function which is globally optimizable using significantly less execution time than the incumbent approach while maintaining or improving performance. The resulting method is competitive with GP-based BO in terms of accuracy per evaluation, and is superior in terms of accuracy per walltime on black-boxes of low to moderate computational intensity.
LGMT: A Tool for Testing the Logical Reasoning Reliability of LLMs
Large Language Models (LLMs) increasingly serve as reasoning components in modern software systems, yet a model that answers a logical query correctly can contradict itself when the same problem is restated in an equivalent form. Static benchmarks evaluate queries in isolation and therefore fail to expose such inconsistencies. To address this limitation, we present LGMT, an open-source tool that detects reasoning inconsistencies through metamorphic relations grounded in first-order logic. Given a source test case in premise-conclusion form, LGMT generates logically equivalent follow-up cases and checks whether the model's entailment predictions agree across the pair, without ground-truth labels. The tool provides 20 built-in metamorphic relations, supports custom ones verified by the Z3 theorem prover, and runs from a CLI or a web studio, including an offline mock mode requiring no API key. Across six widely used LLMs on a bundled benchmark of 3,091 metamorphic groups, LGMT reveals inconsistency rates ranging from 20.84% to 29.44%. LGMT is publicly available on GitHub at https://github.com/MaxwelsDonc/lgmt-tool, with a demonstration video at https://youtu.be/gou4opptu1U.
What Transfers Across Protein Pockets? Experience Reuse in Molecular Optimization for Agentic Structure-Based Drug Design
LLM agents optimize a ligand in a protein pocket by editing it step by step and docking each edit. Recent agents first spend extra dockings probing the complex with controlled edits; guidance induced from these probes is reported to help more than the chemical knowledge the model already carries. The probes are then discarded with the instance that produced them, so the obvious next step is to keep them in an experience base, letting a new pocket inherit what earlier ones already paid for. Such a base is read through a key: the record properties under which past edits are pooled and a new one is looked up. Using the full log of one such run over the CrossDocked2020 test-set pockets, we ask whether its keys recur on a pocket the base has never seen and still separate improving from worsening edits. {Using} the contacts at the site being edited, the action, and the round as {a} key, the base separates them sharply. Within our analysis, this separation is largely explained by how much the edit changed the molecule's size, the action, and the round, none of which describes the target. That is not because the target is irrelevant: naming it outright separates them several times more sharply. For a pocket absent from the base, transfer must rely on a description rather than its identity. Among the exact-match descriptions we evaluate, the more specific ones rarely recur, whereas the coarser ones provide little separation; the signals that do transfer primarily describe the edit and the molecule it produced rather than the target. Under the representations and lookup scheme studied here, an experience base may be more useful for prioritizing an agent's own proposals for docking than for directly prescribing what to build.