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Recuperación y RAG

1233documentos

110últimos 7 días

arXiv AI Papers

NE-R1: Enhancing Named Entity Recognition Model via Reinforcement Learning

Named Entity Recognition (NER) has achieved substantial progress since the advent of large language models (LLMs). Nevertheless, the recognition of long-tail and domain-specific entities remains challenging due to the deficiency in parametric knowledge. Retrieval-augmented generation (RAG) offers a promising remedy by injecting external knowledge, but it also introduces noise and unnecessary cost when dealing with familiar cases. In this paper, we propose NE-R1, a novel framework for adaptive retrieval-augmented NER. We design a "retrieval-on-demand" mechanism for NER. Then we integrate it into models by a two-stage training method: (1) multi-task instruction tuning initialization; (2) end-to-end RL optimization with CoT. To achieve reasonable selection between parameterized and external knowledge, we design a multi-dimensional reward considering both accuracy and retrieval benefit. NE-R1 achieves state-of-the-art performance on various benchmarks, with an average F1 score gain of 2.52% in in-domain evaluation and 1.18% in zero-shot cross-domain evaluation.

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arXiv AI Papers

Subcellularly Resolved Single-Cell Embedding Learning with Transcriptomic data, Protein Structure and Localization Information

Existing cell embedding methods predominantly rely on transcriptomic or proteomic measurements and represent each cell as a holistic entity, thereby overlooking the subcellular localization of individual molecules. Moreover, they rarely incorporate protein structural information, despite its fundamental role in determining molecular interactions and functions. In this work, we propose a multimodal framework for learning subcellularly resolved cell embeddings by jointly leveraging RNA expression profiles, protein sequence representations, and protein structural information. Specifically, we employ a cross-attention architecture to integrate transcriptomic, sequence, and structural modalities and model their interactions within distinct subcellular compartments. The resulting embeddings represent each cell through its fine-grained subcellular organization, capturing both molecular expression patterns and the functional properties of the associated proteins. By learning cell representations at subcellular resolution, our framework preserves spatially organized biological information while integrating complementary signals across multiple molecular levels. To the best of our knowledge, this is the first framework that produces subcellularly resolved cell embeddings by jointly incorporating transcriptomic information, protein sequence representations, and protein structural knowledge within a unified cross-modal learning paradigm.

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arXiv AI Papers

SonicCaps: Large-Scale Diverse and Fine-Grained Captioning for Improved Audio-Retrieval

Recent advances in audio-language modeling have been driven by large-scale audio captioning datasets. However, existing datasets remain limited by low semantic diversity, generic descriptions lacking acoustic details, and one-to-one audio-caption mappings that poorly reflect the inherent ambiguity of auditory perception. We introduce SonicCaps, a large-scale audio captioning dataset comprising ~15M captions paired with ~700k audio clips, generated using a multi-modal large language model (Qwen3-Omni) conditioned on both audio and text. To explicitly promote diversity, we generate around 24 captions per audio via structured prompt engineering and few- shot generation, spanning main descriptions, rephrased variants (verbosity, style) and semantic tags. Human evaluation shows that SonicCaps is rated significantly higher than existing captioning datasets, with fine-grained analyses indicating that our captions are perceived as more descriptive and precise, which strongly correlates with quality judgments. Finally, training CLAP models on SonicCaps with a multi-caption sampling strategy consistently improves audio retrieval and zero-shot classification, with stronger generalization across public and commercial benchmarks. We release both SonicCaps and two specialized CLAP models on hugging face: https://huggingface.co/datasets/Zineb/SonicCaps.

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arXiv AI Papers

Adaptive Critical Token-Aware Retrieval for Repository-Level Code Generation

The repository-level code generation task requires synthesizing code that satisfies task requirements while remaining consistent with the target repository context. Since real-world repositories often exceed the input length limits of LLMs, existing approaches commonly adopt retrieval-augmented generation (RAG) to provide repository-specific context. Despite improving repository-context retrieval, existing methods typically provide context as task-level support, without explicitly identifying the critical tokens that require fine-grained repository context during generation. During the autoregressive generation process of LLMs, errors often concentrate at a small number of decisive positions: once such tokens are generated incorrectly, subsequent code may follow an incorrect semantic path and eventually lead to functional failure. We refer to these positions as "critical tokens". In this paper, we propose ACToR, an adaptive critical token-aware retrieval framework for repository-level code generation. ACToR identifies critical tokens during generation and triggers targeted retrieval on demand to provide repository context at these decisive positions. In addition, we design a position-aware weighting method for dense retrievers to prioritize context that is more informative for generation. We evaluate ACToR on two representative repository-level benchmarks, RepoExec and CoderEval. Experimental results show that ACToR consistently outperforms state-of-the-art methods, achieving relative improvements of 8.4% on RepoExec and 15.4% on CoderEval. Beyond performance gains, we systematically quantify the impact of critical tokens, revealing their central role in major generation failures and highlighting the necessity of targeted retrieval strategies. We provide the code and data at https://github.com/DeepSoftwareAnalytics/ACToR.

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arXiv AI Papers

From Confusion to Clarity: Confusion-Aware Retrieval and Knowledge Injection for Text Classification

Large language models (LLMs) struggle to classify text into taxonomies with many semantically similar labels, as the distinctions are domain-specific and not captured by pre-training. To handle large label spaces, a common approach retrieves top-K candidate labels by embedding similarity and prompt the LLM to choose among them. However, top-K retrieval reduces the number of candidates but does not help the model tell similar ones apart. When two similar labels both appear as candidates, the model lacks the signal to choose correctly between them. We propose a framework that (1) identifies which label pairs the model struggles to distinguish, (2) expands the candidate set to include confusable labels, and (3) generates targeted rules to differentiate between similar candidates. The framework requires no fine-tuning, and the generated rules transfer to smaller, cheaper models. On three benchmarks (WOS, Flipkart, LEDGAR), our approach improves Macro F1 by up to 10.0pp over retrieval baselines, with smaller models (2B--20B) gaining up to 11.5pp via cross-model transfer.

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arXiv AI Papers

A systematic Approach to constructing a Chance-and-Risk Matrix for Semiconductor Supply Chains

Semiconductor supply chains face escalating risks from geopolitical tensions, geographic concentration, and rapid technological shifts, yet no scalable system continuously extracts, structures, and prioritizes risk intelligence from public corporate disclosures. We present an end-to-end pipeline that retrieves corporate documents for semiconductor companies and uses large language models (LLMs) to extract the risks and opportunities they describe. It organizes these into a knowledge graph linking each item to its category, sources, and related events, then merges duplicates and ranks them with a three-layer mechanism combining an algorithmic formula, an LLM relevance adjustment, and expert validation. Applied to five companies across the value chain, the pipeline produces 76,207 scored items, of which an independent check finds 92.6% valid. The automated rankings match expert judgment at an average Spearman correlation of 0.55 for risks and 0.72 for opportunities, and the resulting matrices identify trade restrictions as the dominant cross-company risk.

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arXiv AI Papers

Retrieved but not ranked: surface-form bias in structural retrieval, from mathematics to agent trajectories

We evaluate embedding retrieval where surface form and meaning are pulled apart on purpose: retrieving items that share underlying structure but not wording, in two unrelated domains under one protocol, competition mathematics (MathNet-Retrieve; 500 queries, 117,088-item corpus) and embodied-agent trajectories (ALFWorld-derived; 118 queries, 336 trajectories). In mathematics the failure is complete: strict Hit@1 at the heaviest disguise tier is 0.0% for both production embedders (bootstrap 95% CI [0.0, 0.0]) while the correct item sits in the top 10 nearly always, and in 95.2 to 99.8% of misses the winner is more lexically similar to the query than the correct answer. In trajectories, where surface variation is incidental, the same models land at or near hypergeometric chance when gold must involve a different object, and below chance for all three embedders once gold must differ in object and receptacle: retrieval anchors on literal tokens, not task structure. A lexical reranker control hurts in mathematics and helps in trajectories (closing 26 to 36% of the gap, CIs excluding zero); its sign reveals whether a benchmark's surface variation is adversarial or incidental. An LLM reranker recovers 5 to 63% of the gap in mathematics and 43 to 76% in trajectories; direction replicates across three judges (all 21 cells positive), but effect sizes, tier profiles, and the outlier judge change with domain (paired differences excluding zero everywhere). Mathematics gains concentrate on well-known competitions (+19.8 points, CI [+6.7, +33.2], one of six cells), so part of the recovery is memorization. In a paired downstream experiment (210 queries, graders at 96 to 99% agreement), oracle retrieval was indistinguishable from adversarially bad retrieval (McNemar p = 0.678); the solver's 69.5% zero-shot accuracy is largely a truncation proxy (97 to 100% on finished answers), leaving no headroom.

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arXiv AI Papers

Sierpiński--Knopp Wasserstein Distance for Persistence Diagrams and Applications to 2-Wasserstein Approximation

This paper introduces the Sierpiński-Knopp (SK) Wasserstein distance, a fast metric between persistence diagrams. The SK-Wasserstein distance, denoted d_{SK}, maps diagram points and their diagonal projections to the unit interval via the Sierpiński-Knopp space-filling curve on the upper diagonal triangle. The encoded point sets are then efficiently matched via one-dimensional optimal assignment, in (O(NN)) steps, yielding an explicit diagonal-aware point assignment between the two input persistence diagrams. We show that the SK-Wasserstein distance controls the classical (2)-Wasserstein distance between diagrams, admits an explicit isometric embedding into a Hilbert space, and induces a positive-definite Gaussian kernel, making the resulting geometry directly compatible with Euclidean and kernel-based learning methods. A tighter surrogate dissimilarity, noted (W_Γ), is also introduced based on the point assignments along the curve. Experiments on 12 scientific collections comprising 227 diagrams show median per-collection speedup of (d_{SK}) over state-of-the-art approximations of (W_2) is (626), while the aggregate speedup over the full benchmark is (2100). Average-linkage partitions obtained from (d_{SK}) and (W_Γ) each exactly match the corresponding (W_2) partition on 8 of the 12 collections. Hilbert (k)-means and Gaussian spectral clustering, both based on (d_{SK}), achieve mean adjusted Rand indices (ARI) of (0.756) and (0.800), respectively, with respect to the benchmark reference partitions, compared to (0.750) obtained by average linkage on (W_2). The Gaussian (d_{SK}) kernel supports other kernel-based analysis tasks, as illustrated by its use for contiguous segmentation of ordered diagram collections in our experiments.

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arXiv AI Papers

LatentPress: Context Compression Beyond Text and Vision

Compressed context is usually carried as human-readable text or as rendered images that must be decoded, even when its consumer is a language model. We introduce LatentPress, which writes conversational histories and long documents into a third representation: continuous memory tokens that a frozen decoder reads directly through its input-embedding interface, with no text reconstruction at inference. A small reader-matched writer compresses 4-16while training only an adapter (4.2M-26.2M parameters, \!0.1\% of the decoder). On LongMemEval, LatentPress reaches 0.504 accuracy at 7.70compression versus 0.490 for uncompressed evidence, outperforming text summaries (0.184) and OCR-based compression (0.426 to 0.312). On LongBench-QA, in-domain writers match or exceed raw-context reading at 4-8compression, while 16trails raw. Writing takes 43ms per conversation, roughly an order of magnitude faster than text summarization or OCR reconstruction, and reading is 5-9faster than raw context or cached OCR. We validate the interface under two transfer settings, zero-shot from UltraChat to LongMemEval memory QA and from LongMemEval-derived QA to unseen LongBench document domains, establishing direct soft tokens as a practical machine-facing context interface beyond text and vision. The implementation of the experiments could be found at: https://github.com/xuyd16ai/context_softtoken_compress .

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arXiv AI Papers

AutoConcept: Training-Free Concept-Guided Reranking for Metadata-Available Composed Image Retrieval

Composed image retrieval (CIR) retrieves a target image from a reference image and a text modification. This paper studies metadata-available CIR reranking, where a fixed CIR model first returns a candidate pool and gallery metadata is then used for second-stage concept-guided scoring. We introduce AutoConcept, a training-free reranker that converts concept evidence into an interpretable memory. AutoConcept filters noisy concepts, activates query-relevant positive constraints with an auxiliary negative penalty, and combines base retrieval scores with metadata-based concept-candidate alignment through inference-time calibration. On FashionIQ, AutoConcept yields significant early-rank improvements over WeiMoCIR and consistent plug-in gains on LinCIR candidate pools. Metadata-aware controls show that structured concept memory adds signal beyond direct query-text and extracted-attribute matching, while a query-only variant further supports the effectiveness of concept-level reranking. A supplementary real-human concept-label study indicates that the same memory interface can consume participant-provided evidence. These results position AutoConcept as an interpretable concept-memory reranker for product-style CIR galleries with available metadata.

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AWS Machine Learning Blog

How Boomi Scribe streamlines documentation using AWS

Boomi Scribe is an AI-powered agent on AWS that automatically generates documentation for enterprise integration workflows. Learn how Boomi uses Amazon Bedrock, Amazon SageMaker AI, Amazon S3, Amazon DynamoDB, and AWS Lambda to parse integration DAGs, generate detailed documentation, and compare component versions at scale.

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AWS Machine Learning Blog

Build observable enterprise agentic retrieval using Managed Amazon Bedrock Knowledge Base with AWS CloudFormation

This post builds an enterprise agentic retrieval solution on the Amazon Bedrock Managed Knowledge Base and Amazon Bedrock AgentCore. An agent reasons, routes across multiple knowledge bases, and returns cited answers, with seven layers of observability and both on-demand and continuous evaluation, all deployed with a single AWS CloudFormation chain.

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arXiv AI Papers

Configurable Semantic Chunking for Biomedical Information Extraction in Retrieval-Augmented Generation

BioMedRAG introduced retrieval-augmented generation with a learned chunk scorer for biomedical information extraction. However, it relies on fixed-size chunking which can fragment semantic evidence. We propose a configurable semantic chunking framework that addresses this limitation by combining entity-preserving windows, trigger-centered chunking, proposition-first extraction, tiered trigger prioritization, and hierarchical relation resolution. The framework integrates with BioMedRAG by replacing only the chunk construction stage while preserving the embedding model, learned chunk scorer, generator, and evaluation protocol. We evaluate the framework on biomedical relation extraction benchmarks (GM-CIHT, DDI, ChemProt) and adverse event classification (ADE). On GM-CIHT, the full hybrid configuration achieves 82.6% F1, improving over the fixed-size baseline (74.2% F1) by 8.4 points under our experimental setup. Cross-dataset analysis shows that semantic chunking improves extraction datasets with explicit relation cues, such as GM-CIHT and DDI, while fixed chunking remains competitive or stronger for dense biochemical extraction and binary classification settings such as ChemProt and ADE. By externalizing chunking logic into configuration files, the framework provides an interpretable and adaptable alternative to rigid fixed-size chunking for biomedical RAG pipelines.

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arXiv AI Papers

OntoAligner-Ensemble: Voting-Based Fusion across Heterogeneous Ontology Alignment Techniques

Ontology alignment (OA) has evolved through several methodological paradigms, ranging from lexical and structural aligners to knowledge graph embedding (KGE) models and, more recently, Large Language Model (LLM)-based approaches. Although modern OA frameworks provide unified ecosystems for deploying these heterogeneous aligners, mechanisms for systematically reconciling their complementary and sometimes conflicting predictions remain relatively underexplored. We present OntoAligner-Ensemble, a modular and aligner-agnostic framework that combines candidate correspondences through a configurable two-stage process comprising voting-based fusion strategies followed by post-fusion selection policies. The framework supports any aligner implemented within OntoAligner that produces candidate correspondences, enabling diverse alignment paradigms to be integrated through a unified decision process. To demonstrate its effectiveness, we instantiate the framework using representative lightweight string-aligner, KGE-based, and Retrieval-Augmented Generation aligners powered by both open-weight and API-based LLMs. We evaluate individual aligners and ensemble configurations across eight benchmark tasks from five OAEI tracks spanning biomedical to beyond-equivalence. The results show that ensemble fusion consistently improves the balance between precision and recall and frequently outperforms standalone aligners across diverse domains. Furthermore, our analysis reveals that ensemble composition directly affects the precision-recall trade-off: heterogeneous cross-paradigm ensembles generally improve precision, whereas homogeneous LLM ensembles more often achieve higher overall F1-scores. These findings demonstrate that systematic ensemble learning offers a robust and reproducible strategy for OA while providing practical guidance for selecting ensemble compositions under different alignment scenarios.

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