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arXiv AI Papers

HyCoSeq: Contextual Hyperbolic Representation Learning for Genomic Sequences

Hyperbolic geometry provides a natural inductive bias for genomic representation learning, but existing hyperbolic genomic models primarily use Lorentz convolutions to learn local sequence representations, while their residual pathways do not directly aggregate full Lorentz representations. We propose HyCoSeq, a contextual hyperbolic representation learning framework for genomic sequences. HyCoSeq incorporates weighted Lorentzian residual aggregation into multi-curvature Lorentz encoding, allowing full Lorentz representations to participate directly in geometry-consistent local aggregation. It further introduces a bidirectional long short-term memory network that integrates information from both sequence directions to learn contextual relationships among local representations at different positions within a genomic sequence, thereby extending local hyperbolic convolutional encoding to sequence-level contextualized representations. Extensive experiments across diverse genomic tasks show that HyCoSeq outperforms existing hyperbolic baselines and, without large-scale genomic pretraining, achieves competitive performance against substantially larger pretrained DNA language models.

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arXiv AI Papers

Bellman Policy Optimization

Reinforcement learning with verifiable rewards (RLVR) improves the reasoning capabilities of large language models (LLMs). We introduce Bellman Policy Optimization (BPO), a critic-free method derived from Policy Mirror Descent (PMD). For autoregressive generation with terminal rewards, BPO uses the Bellman equations to reformulate PMD as a trajectory-level objective. The reformulation avoids estimating state values at intermediate states. We prove that it has the same unique optimal solution as the original PMD objective. We derive the practical BPO loss by approximating this objective. Its mismatch-correction weight is a smoothed ratio of complementary token probabilities. Experiments on mathematical reasoning benchmarks demonstrate the effectiveness of BPO.

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arXiv AI Papers

Recurrent GraphNeural NetworkswithSet-BasedAggregation

Recurrent GNNs iterate message passing to convergence, and their logical characterizations to date rely on multi-set aggregation, graded (counting) logics, and halting or acceptance conditions that cannot be verified from the network's parameters. We study recurrent GNNs with set-based aggregation and identify sufficient conditions checkable from the weights for networks to compile into formulas and formulas into networks. The main result is an effective, two-directional equivalence between a class of networks and the Boolean closure of reachability and safety properties, the fragment BΣ^{}_1 of the modal μ-calculus. The fragment is not an artifact: it is the exact expressive level of stabilization over finite vocabulary, which supports fixed points of a single polarity and Boolean combinations thereof, but not the composition of fixed points of opposite polarities. The correspondence needs no counting logic, no external halting signal, and no non-effective acceptance condition, yielding a verifiable path from weights to symbolic explanations for networks meeting the conditions.

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arXiv AI Papers

Anatomical Grounding and Leakage-Aware Multimodal Contrastive Learning for Alzheimer's Disease Classification from Structural MRI

Deep networks trained on structural MRI for Alzheimer's disease (AD) staging often reach reasonable accuracy while attending to anatomically irrelevant regions, and multimodal models that add clinical tables frequently rely on variables that were used to assign the diagnostic label in the first place. We study both issues with a deliberately lightweight slice-based encoder (ResNet18 with a one-layer Transformer over slices) on 1,075 baseline T1-weighted scans from ADNI-1. First, we use FastSurfer segmentations as an anatomical reference: YOLOv8 models trained on segmentation-derived labels localize Alzheimer-relevant structures with mAP_50 above 0.96, and a Grad-CAM comparison shows that the image-only classifier frequently attends to the skull, orbits and background. Second, we adapt a CLIP-style image - tabular contrastive framework and organize ADNIMERGE variables along a label-leakage spectrum. Fusion with cognitive scores yields 87.3% three-way accuracy, which we treat as a leakage-driven upper bound rather than an imaging result; fusion with regional volumes yields 73.0%. We observe that the choice of contrastive target changes what the image encoder learns: on MCI vs. CN, the image-only head reaches 52.4% when the encoder is aligned to cognitive scores and 73.8\% when aligned to volumes, although no tabular input is used at inference. Third, restricting the input to a per-subject crop of the medial temporal lobe raises image-only three-way accuracy from 58.7% to 65.1%. All results come from single runs on a small balanced test set, and we report confidence intervals and the protocol differences that prevent direct comparison with published numbers.

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arXiv AI Papers

Learning Multimodal One-step Flow Policy via Value-weighted Optimal Transport

Offline reinforcement learning aims to learn a policy solely from fixed datasets, which often contain multimodal action distributions. Flow policies can naturally represent such multimodal behaviors, but learning an efficient one-step flow policy remains challenging: standard value guidance often leads to mode collapse or exploits overestimation bias in out-of-distribution regions. To address this, we introduce One-step Flow policy via Optimal Transport (OptiFlow), a framework for one-step flow policy learning as a structured sample-allocation problem. OptiFlow jointly trains a value-aware reference flow policy and an efficient one-step policy, coupling their action samples through state-wise entropic optimal transport. For each state, critic-estimated values define the priority of distillation target actions, while the action-distance cost ensures geometrically compatible pairings. By avoiding direct critic maximization, our transport-guided approach enables in-distribution exploitation by anchoring the one-step policy to high-value, dataset-supported modes without the risk of out-of-distribution divergence. Experimental results demonstrate that OptiFlow effectively captures optimal multimodal behaviors and achieves strong performance across diverse offline RL benchmarks. Our code is available at https://github.com/Yonsei-DILLab/OptiFlow.

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arXiv AI Papers

Learning under Target Shift: Optimal Density Ratio Estimation and Importance-Weighted Regression

We study density ratio estimation and importance-weighted regression under target shift with continuous outputs. Under target shift, the conditional distribution of the inputs given the outputs remains invariant across the training and test distributions, while the output marginal distribution may change. Although this problem has been extensively studied for discrete outputs, the continuous setting is substantially less understood: the importance weights are determined by an unknown density ratio function, for which existing estimation methods lack explicit finite-sample convergence rates. We propose a spectral regularization method in a reproducing kernel Hilbert space (RKHS) for estimating the continuous density ratio from labeled training samples and unlabeled test inputs. Under a source condition with regularity parameter ι>0, we establish high-probability finite-sample guarantees and show that the estimator achieves the capacity-independent minimax-optimal RKHS-norm rate O(n_η^{-ι/(2ι+2)}). We then incorporate the estimated density ratio into importance-weighted regression and characterize the propagation of density-ratio estimation error to the final predictor. When sufficiently many samples are available for density ratio estimation, the resulting regression estimator attains the minimax-optimal rates of standard kernel regression. These results establish a finite-sample theory for continuous density ratio estimation and importance-weighted learning under target shift.

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arXiv AI Papers

Enabling Streaming User Transcription in Full-Duplex Speech-to-Speech Models

Full-duplex speech-to-speech (S2S) models enable natural conversational AI by allowing simultaneous listening and speaking. However, these models typically lack inherent user speech transcription, which is essential for applications such as conversation logging, accessibility features, and quality monitoring. In this work, we propose an efficient method to add streaming ASR capabilities to an existing duplex S2S model by introducing a lightweight ASR head in parallel to the agent text head. Our approach requires minimal additional parameters and no significant architectural changes to the base S2S model, enabling real-time user transcription while preserving full-duplex conversational capabilities including turn-taking and barge-in handling. Experimental results demonstrate that our method achieves streaming average WER of 10.21% on the HuggingFace Open ASR Leaderboard within the duplex S2S framework. Additionally, we show that the same architecture trained as a standalone streaming ASR model achieves competitive results (7.73% WER) compared to current SOTA models. We will open-source our training and inference code to facilitate further research in joint streaming ASR and S2S modeling.

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arXiv AI Papers

SAS: Simple Attention Sparsification via End-to-End Optimization of Context Ranking

Post-training attention sparsification reduces the quadratic cumulative attention cost of pretrained Transformers by selecting a small set of context units (tokens or blocks) for each query. Existing trainable methods usually use a lightweight selector to score context units, followed by hard Top-K selection that blocks gradients from the language modeling loss. Consequently, these methods commonly distill layer-wise dense attention distributions. Although this encourages the selector to rank context units by dense attention weights in the original model, the ranking is not directly aligned with their impact on predictions under a fixed attention budget (i.e., the number of attended context units per query), potentially wasting the limited budget on less useful units. To address this misalignment, we propose Simple Attention Sparsification (SAS), a gated sparse attention mechanism that optimizes context ranking end-to-end with the language modeling loss. The key idea is to inject the selector's continuous scores into attention logits during training, allowing the loss to update the selector through standard backpropagation. We identify several choices crucial for this simple design to work well in practice: placing the gate inside the attention softmax in log form, using normalized softmax gates to calibrate historical context against the always-retained current block, and preserving continuous selector scores so the model learns relative priorities rather than only hard selections. To support long-sequence training, we implement a memory-efficient Triton kernel that integrates SAS into FlashAttention-style computation. Across reasoning, long-context understanding, and agentic tasks, SAS consistently outperforms trainable sparse attention baselines across attention budgets, with especially large gains under tight budgets, demonstrating more effective context ranking for downstream tasks.

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arXiv AI Papers

ASTRIL-MPC: Autonomous Traversal Framework of Articulated Tracked Robots with Language-Guided Neural-Kinematic MPC

In urban search and rescue, articulated tracked robots (ATRs) must traverse structured but contact-rich environments such as stairwells and cluttered building interiors. Reliable autonomy remains challenging because robot-terrain interaction (RTI) is hybrid and discontinuous, and effective flipper-track coordination is difficult to model analytically. We present ASTRIL-MPC, a language-guided neural kinematics model predictive control (MPC) framework for autonomous traversal. A learned kinematics model predicts short-horizon task-state increments from a height sequence and recent trajectories; NMPC plans with multi-objective costs and strict feasibility constraints; and a large language model (LLM) proposes bounded updates to selected weights and bounds through a safety-checked interface with range clipping, rate limiting, and consistency checks. The compiled predictor enables a full control cycle within 100 ms. Across three traversal tasks and a multi-height generalization setting, ASTRIL-MPC improves an aggregate traversal-quality score by up to 71% over a non-adaptive NMPC and by 67% over a PPO baseline, while eliminating measurable collision impacts during descent. These results indicate that combining learned kinematics, optimization-based planning, and language-guided retuning yields data-efficient and robust autonomy for articulated tracked robots.

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arXiv AI Papers

Autonomous Research for Open-Ended Problems: A Case Study on Telecom Ticket Retrieval

Recent breakthroughs in LLM-based systems and their abilities in problem solving and coding have allowed progress in the AI for Science paradigm, potentially replacing human roles in machine learning (ML) research. However, while several frameworks of fully autonomous end-to-end ML research have been proposed, successful implementations of them are often limited to problems with narrow search spaces, like language modeling or biomedical ML benchmarks. In this paper, we explore how autonomous research can be adapted to solve open-ended, industry-grade ML problems, by considering a case study: telecom ticket retrieval, an open-ended task with degrees of freedom in representation, architecture, and training data generation. We discover that autonomous research for open-ended problems with commercial and open-source agents shows both promise and limitations: while autonomous research can excel in narrow hyperparameter optimization, it lacks human-like intuition and creativity and requires operational overhead. Even with minimal human supervision, autonomous research can reach 90\% of state-of-the-art performance (0.34 vs. 0.38 Recall@1) in a much shorter time period (10 weeks vs. 10 months of human work) at a modest cost (up to \$200 per Cursor campaign). Our empirical evidence recommends that human researchers and autonomous research frameworks work together for best results in ML research.

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