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Papers y preprints de los feeds de investigación que seguimos.

6415documentos

arXiv AI Papers

The Last Mile of Coding Agents for Long-Document Tasks: An Empirical Study on Clinical Trial Protocol Digitization

Clinical trial protocols serve as the source of truth for study design, but are mostly written and used as unstructured PDF documents. Digitizing protocols turns static content into structured, machine-readable data that clinical software can analyze, validate, and execute. Coding agents, which select tools, execute code, and revise their approach as they work, are increasingly applied to such long-document tasks, yet it remains unclear how reliably they turn complete documents into accurate structured outputs. We study this question using protocol digitization as a testbed. We introduce TrialPD-Bench, an expert-annotated benchmark of 150 publicly available protocol PDFs spanning four task categories. Beyond final-answer performance, our evaluation measures evidence recall from agent traces, agent behavior, and cost. Across nine proprietary and open-weight models in five coding-agent harnesses, even the strongest agents do not fully solve protocol digitization. Our analysis further shows that agents usually locate the required evidence but fail in the last mile of transcribing and structuring it. We further develop TrialScribe, a domain-specific harness that equips coding agents with task skills and a verification loop. TrialScribe improves a locally served open-weight model by 6.2-59.4 points across eight metrics, enabling it to match or surpass proprietary models such as GPT-5.6-Sol.

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arXiv AI Papers

How Low Can You Go: Fine-Tuning LLMs with Bayesian Optimization (LlMBO)

Recently, Morris et al. introduced TinyLoRA, a strategy for LLM fine-tuning which introduces arbitrarily few parameters, and demonstrated accuracy improvements using less than 10 parameters rather than the {10,000} typically demanded by LoRA-based methods. However, that study continued to use gradient-based local search methods of the kind deployed for training multi-billion parameter LLMs in the first place. This article is predicated on the observation that, in the low dimensional setting, global optimization methods become tractable, unlocking Large language Model Bayesian Optimization (LlMBO). LlMBO is sample-efficient, gradient-free, memory-light, parallelizes across devices without synchronization, and, unlike policy-gradient methods, can optimize greedy-decoding accuracy directly. We describe numerical experiments comparing LlMBO against GRPO on fine-tuning tasks for a variety of models on a math benchmark suite which show that LlMBO can be a suitable alternative in this regime, matching or exceeding GRPO's fine tuning gains, while using a fraction of the compute and memory.

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arXiv AI Papers

EgoOmniWorld: Unifying Egocentric Understanding via Ego-Action-World Interactions

Egocentric video understanding spans diverse capabilities, modalities, and evaluation formats, yet these are often studied in isolation despite their tight coupling in real-world interaction. We propose the Ego-Action-World interaction loop as a unifying principle: the wearer perceives the world, forms goals, acts, changes the world, and uses feedback to guide subsequent behavior. Based on this view, we introduce EgoOmniWorld, a benchmark organized around four complementary interaction structures: Node captures ego, action, and world states; Edge captures directed relations among them; Chain captures linked dependencies; and Loop captures feedback-closed interactions. We develop an interaction-first, evidence-grounded data pipeline that extracts structured interactions from egocentric videos, grounds them in visual and auditory evidence, and generates questions according to their interaction structure. Required modalities and single- or multi-turn formats follow naturally from the supporting evidence and dependencies. EgoOmniWorld contains 24,166 QA groups, including 20,284 training and 3,882 test samples. Experiments on representative open- and closed-source multimodal large language models reveal substantial and uneven limitations across interaction structures. Models trained on EgoOmniWorld improve in-domain interaction understanding and generalize to existing egocentric benchmarks. EgoOmniWorld provides a unified foundation for evaluating and advancing egocentric video understanding. Data, code, and models will be released.

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arXiv AI Papers

Aligning Faithfulness for Theory-Scale Autoformalization

Autoformalization (AF) requires more than compilation: formal statements must preserve the meaning of their informal sources, a property known as faithfulness. An emerging frontier is the automated evaluation of this property, yet most existing methods operate at the statement level and produce whole-item verdicts, failing to reveal how individual expressions correspond or which contextual interpretations support the judgment. This omission is consequential because AF is inherently theory-scale: target statements derive their meaning from surrounding mathematical material and unstated conventions. We formulate faithfulness evaluation as a context-aware align-then-label problem: identifying phrase-level correspondences between informal and formal statements and assigning a faithfulness label to each under explicitly specified contextual interpretations and assumptions. We also introduce FaithAlign, the first theory-scale faithfulness benchmark comprising 460 items and 4,982 annotated phrase-level links, alongside FaithAlign-Gap, a companion set of 146 items with informal context and assumptions withheld. Each FaithAlign item includes the target statement pair, relevant context, formal dependencies, and, where needed, assumptions specifying one given interpretation. Across 8 models, GPT-6 Astra achieves the highest defect F1 at 47.8% and identifies all defects in only 4.5% of items with two or more defects. On FaithAlign-Gap, Astra identifies only 28.2% of undecidable items as such. These results show the difficulty of recovering context-dependent correspondences, establishing FaithAlign as a testbed for fine-grained, context-aware faithfulness evaluation.

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arXiv AI Papers

Judges Follow the Reference: The Derivation Gap in Verifying Tool-Call Arguments

Tool-call judges evaluate argument values proposed by LLM agents. We find that they accept a correct value less often when their input holds no reference for it, that is, no text that says what the value should be. This happens when the value is a default value from the function schema that the user did not mention, when it has to be inferred, or when the text it comes from was cut from the judge input. We call this drop in acceptance the derivation gap. It appears across all seven judges we evaluate, including System One models CLM and Jev. The gap is not only a truncation artifact: correct default values have the largest gap on a benchmark with no truncation. A controlled source-relocation test shows that judges follow the reference in their input: they favor a visible incorrect value over a correct value whose source is hidden. We introduce DeRef (Derived Reference): a separate model reads the full history without seeing the candidate and writes a reference for the judge. Across three benchmarks, DeRef improves overall argument AUROC for all judges tested. On the controlled test, it raises AUROC from chance or below to between 98.40 and 99.59.

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arXiv AI Papers

Steering the Fidelity in State Preparation on Noisy Bosonic Systems with Risk-Seeking Optimization

In order to execute quantum algorithms on bosonic quantum computers, it is necessary to encode their inputs into a desired target quantum state, with a process called state preparation. In real settings, state preparation methods operate in stochastic scenarios, where the prepared state is represented as a mixed state, that is a probabilistic ensemble of pure states. Therefore, existing state preparation methods optimize a variational ansatz by averaging over all possible sequences of photon loss events contained in the prepared ensemble, yielding an output state which approximates the desired target with a certain average fidelity. Such an approach, however, does not take into account directly the distribution of fidelities across states in the ensemble. In this work, we aim to maximize the fidelity of only a subset of pure states sampled from the prepared ensemble, at the cost of reducing the average fidelity overall. This trade-off is relevant when the goal is to obtain high-fidelity states with a certain probability, rather than maximizing the average fidelity of the prepared ensemble. We borrow and adapt objective functions from risk-sensitive optimization, a framework that optimizes specific characteristics of a distribution rather than only its expectation, and that has been successfully applied in Reinforcement Learning. In the considered experimental settings, our results show that the infidelities of some pure states in the prepared ensemble can be reduced by up to four orders of magnitude when using risk-seeking objectives, compared to those achieved using the standard optimization of the average fidelity. Furthermore, we show that it is possible to control the trade-off between the probability of obtaining high-fidelity states and the lowest infidelity threshold reached, providing the flexibility to select the operating point that best suits a certain application.

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arXiv AI Papers

Task-evoked eye movements as candidate digital biomarkers of depression severity in adolescents and young adults

Objective digital measures of depression severity could complement conventional symptom assessments and facilitate more timely clinical evaluation. Here, we investigated whether task-evoked eye movements provide interpretable behavioral markers of depression severity in adolescents and young adults. In this single-center, cross-sectional study, 155 participants aged 14--20 years completed emotional-spatial free-viewing and memory-guided recall tasks and were stratified by 17-item Hamilton Depression Rating Scale scores. We examined 19 prespecified eye-movement features across six task-informed domains using covariate-adjusted ordinal-trend models. Greater depression severity was associated with lower gaze-allocation entropy (standardized β=-0.599), fewer inter-area switches (β=-0.526), longer first target-entry latency (β=0.572), and lower target dwell proportion (β=-0.678; all false-discovery-rate-adjusted q<0.001). Emotion-specific attentional-bias measures were not associated with severity, whereas associations involving fixation dispersion weakened after adjustment for anxiety symptoms. In a complementary machine-learning analysis incorporating 44 candidate eye-movement features and demographic covariates, a three-stage cascade classifier achieved the highest four-class stratification performance (accuracy, 0.665; macro-F1, 0.670; area under the receiver operating characteristic curve, 0.869), outperforming single-stage and two-stage approaches. Together, these findings identify altered visual exploration and memory-guided gaze control as candidate digital biomarkers of depression severity, rather than generalized negative attentional bias. These results support further prospective evaluation of task-evoked eye tracking as a complementary approach for timely severity assessment and clinical decision support.

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arXiv AI Papers

Recalibrating Many Questions with Few Labels: Minimax Rates and Identification Limits

Many related prediction problems, which we call questions, come with few labels each. What information can be shared across them, and what is actually necessary for good decisions? We answer both for recalibration, motivated by decision models such as Jev (TypeSafe AI, 2026) that return a probability for any yes/no question a developer writes. A predictor reports a probability P with output law μ on m questions, each with n labels and a nondecreasing map g_j(p)={P}(Y=1P=p); the compound risk is the excess Brier score over the true maps, averaged over questions. Over maps within sup-distance τ1 and total variation V2 of one nondecreasing shape (fixed effects), the minimax compound risk is (mn)^{-2/3}+\{τ^2,1/n\}+\{τ^2,V^2,(V/n)^{2/3}\} up to universal constants, for every non-atomic μ. A pooled isotonic fit with a per-question correction sized once, on held-out labels of all questions, attains it without knowing τ, V or μ (n2, m3); tuning each question on its own labels loses a factor of order \{n,(m^2/n)\} when the maps differ by constants and m^2/n is large. When the maps are drawn from an unknown prior (random effects), other questions need not identify the Bayes rule. The loss, the identification regret, is at most 2^{-n} once the law of a question's data is known, extending a bound of Skibinsky (1968) for coins, and in the worst case at least β_^{-n}/(72{n}) at every finite m, where β_3.583. Beyond a few labels per question, what cannot be learned is nearly unnecessary. For constant maps (an uninformative predictor) and constant-map priors, the exponential base is exactly β_, not the 4 suggested by the moment range; for monotone maps it lies in [2,β_].

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arXiv AI Papers

SoK: Rethinking Membership Inference in Tabular Machine Learning

Membership Inference Attacks (MIAs) are currently the dominant approach to evaluating privacy in machine learning applications. Despite their significance, several concerns remain unexplored, particularly with regard to tabular data. Existing evaluations focus predominantly on high-dimensional datasets, leaving the privacy behavior of small-to-medium datasets unexplored. In this paper, we present a new taxonomy for MIAs and conduct a comprehensive study of the factors influencing vulnerability. We evaluate four distinct state-of-the-art attacks across diverse tabular datasets and model architectures. Our results show that datasets with higher class granularity and majority class percentage are more susceptible to MIAs. We further demonstrate that advanced MIAs are highly dependent on adversarial knowledge of the target model, while reference model-free attacks often achieve statistically comparable results. Most importantly, we show that records with unique signatures (single-outs) remain highly vulnerable, even when common defenses are applied. These findings indicate that current defenses reduce average leakage, but fail to adequately protect the most sensitive individuals.

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arXiv AI Papers

ReTerm: Recovery Training for Self-Improving Terminal Agents

Terminal agents have shown strong abilities in complex coding tasks. However, they often struggle to recover from errors during long-running execution (e.g., command errors, faulty implementations), eventually leading to task failures. To this end, we present ReTerm, a self-improving terminal agent trained by learning how to recover from its own failed terminal tasks. To support its training, we construct a customized data pipeline and produce ReTerm-10K, a high-quality dataset that provides effective recovery demonstrations for SFT cold start. Furthermore, we propose ReTerm-GRPO, an online RL algorithm that forks from the agent's own failure states to generate multiple independent self-recovery attempts. By learning from whether these attempts successfully complete the task, the agent self-improves through its own recovery experience. Built on Qwen3.5-9B, our ReTerm-9B achieves 34.8% Pass@1 on Terminal-Bench 2.0, improving over the base model by 14.6 points. Further analysis shows that our method achieves consistently higher recovery rates across diverse error categories compared with standard GRPO training. All code, data and model are released at https://github.com/twothsnd/ReTerm.

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arXiv AI Papers

Lifting: Quantum State Discrimination Framework for Mid-Circuit Measurements

Quantum computing promises new capabilities beyond classical computation. Mid-circuit measurements (MCMs) enable error correction and outcome-dependent control, but their reliability is limited by noise on superconducting hardware. These operations depend on accurate quantum state discrimination (QSD), which assigns measured signals to state labels. Neural network-based (NN-based) QSD improves this assignment, yet its error remains bounded below by the Bayes risk of the available readout distributions. A complementary challenge is state deterioration as successive measurements accumulate and circuit execution advances, making static calibration less representative of the workload. We present Lifting, a QSD framework that addresses both challenges through repetition encoding, neural decoding, and in situ calibration. Encoding supplies joint in-phase and quadrature (I-Q) readout signals from the target and auxiliary qubits, while contextual calibration trains the decoder for the conditions encountered during execution. Our theoretical analysis shows that retaining additional channels from a fixed joint distribution cannot increase Bayes risk and establishes sufficient conditions for contraction of an overlap-based upper bound. Experiments across three IBM processors evaluate the framework on repeated stabilizer measurement, parity-check, and teleportation workloads.

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arXiv AI Papers

ProTok: Unified Protein Tokenization via Modular Multi-Codebook Quantization

Protein sequence, structure, and functional annotations each capture complementary aspects of protein biology, yet existing tokenizers encode each modality independently, limiting the expressiveness of discrete protein representations. We present ProTok, a unified protein tokenizer that maps all three modalities into a modular discrete vocabulary via product quantization with per-modality codebook groups and modality dropout. A single ProTok checkpoint supports flexible inference from any modality subset without retraining. On seven StructTokenBench benchmarks spanning 14 tasks and 28 test splits, ProTok achieves an average rank of 1.4 across all structure-only tokenizers, placing first on 21 splits and among the top two on 27 of the 28. These gains come without sacrificing reconstruction: ProTok's tokens reach 0.939 lDDT on CATH 4.2, showing that multi-codebook quantization and multi-modal training yield tokens that are both reconstructable and informative. ProTok's structure tokens further lead all baseline structure tokenizers on zero-shot functional retrieval across CATH, Enzyme Commission, and Gene Ontology label hierarchies. The vocabulary also supports generation: a compact language model trained from scratch over ProTok tokens jointly generates backbone and sequence, with 52% of sampled backbones designable versus 21% for a parameter-matched GeoBPE baseline. ProTok shows that structure, sequence, and function can share one discrete vocabulary, motivating protein language models that reason over a unified token stream.

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arXiv AI Papers

MemoryVLN: From Ego-Aware Memory Representation to Cross-Context Memory Reuse in Vision-Language Navigation

Large vision-language models (LVLMs) have shown strong potential for embodied vision-language navigation (VLN), yet their performance degrades on long-horizon trajectories due to context-length limits, redundant historical observations, and unstable spatial alignment across time. These issues make it difficult to both compress long navigation histories and reliably reuse past spatial experience. To address these limitations, we propose MemoryVLN, a unified memory-driven navigation system built around memory construction and management. During memory construction, Long Sequence Compression employs forgetting-curve-inspired temporal sampling to preserve dense recent evidence and sparse yet representative distant observations under a limited token budget. Ego-Aware Memory Representation further integrates 2D semantic tokens, 3D geometric tokens, and 6D agent poses, allowing each memory to encode both what was observed and where it was observed. During memory management, Hierarchical Memory Bank maintains in-episode and context-level memories through cross-context warm-start and confidence-controlled write-back. Memory Enhancement then retrieves the Top-K relevant memories according to the current navigation state and fuses them with the current visual tokens. Together, these mechanisms transform raw navigation history into compact, spatially grounded, selectively retrievable, and reusable navigation experience. Extensive experiments on R2R-CE and RxR-CE demonstrate consistent improvements over the state-of-the-art baselines by a substantial margin (i.e., 2\% and 6.5\% in successful rate).

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arXiv AI Papers

Simplifying and Improving On-Policy Distillation for Few-Step Diffusion

Few-step distillation reduces the sampling cost of diffusion and flow models, but existing approaches often require auxiliary score models or specialized architectures. We show that simple on-policy velocity regression already provides a strong foundation for 4-NFE generation. To represent teacher velocity variation within each coarse transition, we introduce Pivot, a training-only residual proxy that separates local corrections from the student's interval-mean prediction. We further repel the student from weaker teacher predictions, providing a lightweight mechanism for avoiding undesirable modes. The resulting framework, Simplified Matching Distillation (SMD), remains entirely regression-based, requires neither online score estimation nor adversarial training, and leaves the deployed generator unchanged. We evaluate SMD on image generation and editing, 3D generation, video synthesis, and joint audio--video generation, scaling to 33 billion parameters. At 4-NFE, SMD outperforms strong few-step baselines and surpasses multi-step teachers on several benchmarks. It also supports cross-model, multi-teacher, and causal-video distillation.

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arXiv AI Papers

Graph Metanetworks for Transformer Based Language Models

Weight-space learning treats the weights of neural networks as data, processed by other models called metanetworks. A key challenge is that different weights can realize the same function, related by a group of symmetries the metanetwork should respect. While symmetry-aware metanetworks for simple architectures such as MLPs are well developed, a comprehensive treatment of transformers, and in particular transformer-based language models, is still missing. Importantly, their weight space has a richer symmetry group: beyond neuron permutations, attention introduces continuous general-linear symmetries of the attention matrices and permutations of entire heads. Existing methods for transformer weights either capture only part of these symmetries or are restricted to a single, fixed architecture, and none accounts for language-model-specific components such as the token embeddings. Building on graph metanetworks, we propose a graph-based approach that is both symmetry-aware and applicable across depths and widths. We formalize a weight-space symmetry group of complete decoder-only language models and provide a graph construction that is invariant to it. We further introduce two new transformer-population datasets with novel tasks, such as training-corpus prediction and fine-tuning detection, on which our approach notably outperforms existing baselines.

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arXiv AI Papers

How Safe Is ChatGPT Health Advice? Evidence from Real User Conversations in Four Global South Countries

People increasingly bring their health questions to ChatGPT, yet safety evaluations of LLM health advice rest almost entirely on clinician-authored vignettes, synthetic prompts, or simulated user profiles. The gap is widest for the Global South, where concerns about demographic bias and unsafe recommendations are well documented but have never been tested on real usage. We present, to our knowledge, the first demographically grounded safety evaluation of real-world health conversations with ChatGPT. From a consent-based data-donation corpus of 202,590 conversations from 1,252 users in India, Nigeria, Brazil, and Pakistan (December 2022 to February 2026), each linked to self-reported age and gender, we identify 15,555 health conversations, classify their health intent using an LLM classifier adapted from an established taxonomy, and score response safety under both a context-blind and a user-context-aware rubric. Roughly one in five health conversations receives a high-risk rating. Risk concentrates in symptom and condition queries and recurs through identifiable failure modes: unsafe medication or dosage guidance, harmful self-diagnosis, missing safety warnings, encouraging over-reliance on the model, and failure to refer users to professionals. Supplying the user's own accumulated context raises the high-risk share by 13-17 percentage points, and about one in four conversations rated safe in isolation turns out to be unsafe for the specific person asking. Safety evaluations built on synthetic cases are likely to miss these harms.

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arXiv AI Papers

Readout Scaling Shapes Sparse Feature Recovery

Readout scaling changes what a sparse autoencoder (SAE) learns, but the benefit of removing it depends on the data. We use readout-canonicalized decision-space (RC-DS) coordinates to remove singular-value gains while preserving retained decision information. At a fixed readout condition number, changing the generating distribution reverses which training coordinates recover known factors best. In our controlled coordinate-matching study, recovery is highest when training restores the space in which the factors were generated. When factors are generated before readout scaling, RC-DS increases mean sparse-factor recovery from 0.506 to 0.913 at condition number 100, compared with centered-logit training under the same budget. An exact wrapper reproduces RC-DS training to numerical precision, isolating training geometry rather than additional information. In neural policies, RC-DS improves mean logit reconstruction under the tested budgets. On three fixed language-model checkpoints, RC-DS has higher mean gain-free reconstruction in all 18 tested task-sparsity settings, while centered-logit SAEs reconstruct output logits better in 17. Small-label-head controls show that longer training reduces the reconstruction gap from 0.0198 to 0.0016. Together, these results show how readout scaling, the data distribution, and training shape sparse learning. RC-DS provides an information-preserving method for studying and controlling the readout's contribution. Separate label-detection and steering tests distinguish these reconstruction effects from task-specific feature usefulness.

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arXiv AI Papers

Teacher-Guided Tool Learning for Small Language Models via Bidirectional KL Constraints

External tools can extend the capabilities of small language models (SLMs), enabling their deployment in resource constrained environments. However, their limited capabilities make it difficult for SLMs to discover effective tool use behaviors through reinforcement learning alone, while direct teacher supervision suffers from teacher student behavioral distribution mismatch and may propagate erroneous preferences. To address these challenges, we propose Selective Teacher guided Policy Optimization (SeTPO), which coordinates student exploration with selective teacher guidance and persistent demonstration supervision. Specifically, SeTPO incorporates reverse KL derived token level teacher feedback into policy advantages on low reward trajectories, while auxiliary forward KL supervision preserves teacher demonstrated behaviors throughout training. Under an idealized bidirectional KL objective, we theoretically establish that the optimal policy achieves expected reward no lower than the teacher's while retaining a guaranteed fraction of the teacher's probability mass. Extensive experiments on BFCL v4 and API Bank demonstrate that SeTPO achieves superior overall performance over supervised fine tuning, reinforcement learning, and distillation baselines across all three student scales.

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arXiv AI Papers

Kairos: Transactional Security Enforcement at the System Boundary for LLM Agents

Large language model (LLM) agents are becoming an integral part of the software development lifecycle, and the capabilities granted to them allow an agent to act with the user's authority on any resource it can access. The reach that gives an agent its utility is equally available to an attacker who can steer it. Anything an agent ingests can carry an injected instruction, and since the model does not reliably distinguish instructions from data, indirect prompt injection should be mitigated by mediating the effects the agent produces. Such mediation faces a structural difficulty. Legitimate work and the first step of an attack often look alike when an individual action is observed, and what separates them lies later in the trace, so a monitor limited to allow and deny is forced to decide before the evidence accumulates. We present Kairos, a reference monitor at the isolation boundary of an unmodified, opaque agent, where a tool call, a shell command, and a script the agent writes all cross the boundary as the same file and network operations, so that confinement holds regardless of the agent's behavior. A declarative policy that states which sources are trusted decides most effects deterministically and defers the rest, which are held while the agent continues speculatively. A decision oracle with bounded authority, such as a language model or a human, releases or refuses each deferred effect on the trace. Across three benchmarks and three agent models, Kairos outperforms existing defenses in the trade-off between attack success and utility. In particular, on AgentDojo, it reduces attack success from 47.0\% to 2.7\% while its benign utility stays at the level of the undefended agent.

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arXiv AI Papers

Learning Perturbation-Specific Representations through Conditional Energy Prior for Cellular Response Prediction

AI-based cellular perturbation prediction is essential to accelerate drug discovery and therapeutic identification. However, perturbation-specific signals are generally obscured by cellular complexity, making it difficult for existing methods to correctly capture perturbation effects. To address this problem, we propose PerturbEnergy, which introduces a conditional energy-based prior over perturbation representations. It assigns lower energy (higher probability) to representations compatible with the given perturbation and higher energy to others, thereby explicitly tilting the latent space toward perturbation-preferred regions. Besides, PerturbEnergy can be integrated into autoencoder architectures as we find its Evidence Lower Bound (ELBO) is equivalent to the ELBO of the complete autoencoder. We further prove that optimizing PerturbEnergy increases the lower bound on the conditional mutual information between representation and perturbation. Extensive experiments on four benchmark datasets demonstrate the effectiveness of our PerturbEnergy: it improves perturbation recognition especially in latent space with improvement of up to 83.2\%; It also achieves state-of-the-art performance for predicting top-50/100/200 differentially expressed gene(DEG) response and remaining competitive on highly variable gene(HVG) prediction. The code is provided: https://github.com/BlueWhaleLab/PerturbEnergy

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